The Three Gorges Dam (TGD) Project is the largest water conservation project in human history. It provides comprehensive benefits encompassing flood control, hydropower, shipping, water supply, energy conservation, and emissions reduction (
Zheng 2016). The construction and operation of the Three Gorges Reservoir (TGR) has influenced the regulation of the Yangtze River and high/low water levels downstream and attracted the attention of researchers worldwide. From 1950 to 1998, the Yichang-Hankou reach of the Yangtze River mainly underwent a process of siltation. From 2003 to 2007, scouring dominated (
Chen et al., 2010). Based on the comparison of data from 2009 to 2010 with that from 1998 to 2002, there is evidence of deep, one-dimensional undercutting in the 100 km downstream of the dam and alternating siltation and scouring further downstream (
Yuan et al., 2012;
Dai and Liu, 2013). The distribution of siltation and scouring along the course of the river evolved from “bed scouring and beach building” before water was stored at the TGR to “erosion of both bed and banks” afterwards (
Xu et al., 2011,
2012;
Dai and Lu, 2014). Scouring is concentrated in the low-water channel (
Han et al., 2014) of the Yichang-Chenglingji reach of the river (
Xu et al., 2011). Based on the comparison between 2012 and 2002, undercutting was the principal form of scouring in the middle and lower reaches of the Yangtze River. The river’s cross section became deeper and narrower (
Xu et al., 2013). Existing studies on the channel morphology are mainly based on specific time periods after water was stored at the TGR. Previous studies did not provide a comprehensive analysis reflecting the differences in channel adjustments on the scale of individual reach of the river at different stages of the TGR’s development. Low water levels downstream of the dam are dropping (
Sun et al., 2015). This effect was anticipated (
Lu et al., 2002;
Fang et al., 2012) because it occurs downstream of large reservoirs worldwide (
Bormann et al., 2011). Worldwide, flood water levels downstream of large reservoirs generally increase slightly or remain unchanged (
Bormann et al., 2011). Evaluations of the changes in flood water levels at given flow rates in the time since water has been stored at the TGR are inconclusive. Based on the results of different studies, the flood water levels have decreased (
Jiang and Huang, 1997), remained basically unchanged (
Li et al., 2009), slightly increased, or significantly increased (
Mei et al., 2015;
Zhang et al., 2016). Some research indicates that the flood water levels in the river channel downstream from the TGR have not decreased under the influence of clear water released from the reservoir. Instead, the capacity of the Jingjiang reach to divert floodwater to the Dongting Lake and the river’s overall flood discharge capacity have decreased (
Mei et al., 2015). From 2003 to 2013, the water level corresponding to a flow rate of
Q = 50,000 m
3/s at Hankou Station has increased (
Mei et al., 2015). Intense scouring of the riverbed is the main cause of the decrease in low water levels. Thickening beaches, narrowing of the flood channel, roughening of the riverbed, and increased riverbank vegetation are the main elements contributing to rises in flood water levels (
Moshe et al., 2008;
Greene and Knox, 2014). In the time since water has first been stored at the TGR, the channel morphology downstream has changed; the riverbed has become rougher; there are fewer flood days per year; and human activities have increased. The effects of these changes on flood water levels have not been thoroughly examined. Localized flooding occurred between June and August 2016 in the middle and lower reaches of the Yangtze River. Water levels at Luoshan and further downstream exceeded flood warning levels. However, the flow rate corresponding to flood warnings was lower than that of 1998 or 2010. This paper aims to explain the reasons for that.